KAT provides a suite of tools that, through the use of k-mer counts, help the user address or identify issues such as determining sequencing completeness for assembly, assessing sequencing bias, identifying contaminants, validating genomic assemblies and filtering content.
KAT is geared primarily to work with high-coverage Ingen syster williams i franska oppna reads from Illumina devices, although can work with any fasta or fastq sequence file. Further information can be gleaned through pairwise comparison of spectra, making KAT useful for WGS library comparisons and assembly validation.
We selected Jellyfish for this task because it supports large K values and is one of the fastest k-mer counting programs currently available. KAT supports Unix, linux or Mac systems. Should you discover any issues with KAT, or wish to request a new feature please raise a ticket here. Alternatively, contact Daniel Mapleson at: However, please consult the Frequently Asked Questions page first in case your question "Ingen syster williams i franska oppna" already answered there.
Open source code available on github: This documentation is hosted publicablly on read the docs: We owe a big acknowledgment to all TGAC staff that has been bored eternally with k-mers, you have all been incredible patient and supportive with us. Thanks to Dan Sargent for the use of his P. Thanks to all the KAT early adopters users who have provided invaluable feedback on the tool in its early stages: And more recently, those from further afield who have contributed on github.
A big thanks to the author of jellyfish, Guillaume Marcais. Jellyfish is fantastic piece of software and is critical to enabling KAT to do what it does in an efficient and timely fashion. Last but not least a very Ingen syster williams i franska oppna thanks to the Lab guys on their white coats, trying to make sense of all our comments, giving us better data each day and trying to get into our heads all the complex explanations for the biases and extra variability we were finding day after day.
Navigation index next kat 2.
Detecting GC bias 4. Checking library consistency 4. Contamination detection and extraction 4.
Genome assembly analysis using k-mer spectra 4. Distribution decomposition analysis 4. Finding repetitive regions in assemblies 5. Frequently Asked Questions 5. Can KAT handle compressed sequence files? Why is jellyfish bundled with KAT? Should I dump jellyfish hashes to disk? Table Of Contents 1.
Frequently Asked Questions Next topic 1. Installation This Page Show Source. Created using Sphinx 1. of a specially designed microwave peptide vial and wash station to enable the synthesis of peptides using the Initiator without any system modifications. Photograph: Terry Williams/Getty Images.
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- It is a versatile reducing agent for the reductive amination of carbonyl compounds and reduction of imines.
- KAT provides a suite of tools that, through the use of k-mer counts, help the user address or identify issues such as determining sequencing completeness for assembly, assessing sequencing bias, identifying contaminants, validating genomic assemblies and filtering content.
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Detecting GC bias 4. The complete vial is easily assembled and consists of a glass vial, HDPE frit, check valve and snap cap with septum. It is a versatile reducing agent for the reductive amination of carbonyl compounds and reduction of imines. Literature Videos News Related Products. Healthcare markets Dental products.
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- Biotage® MP-Cyanoborohydride is a macroporous polymer supported cyanoborohydride. It is a versatile reducing agent for the reductive amination of carbonyl.
- Welcome to KAT’s documentation! — kat documentation
How Do I Get out of the Friend Zone?Social Commitment. Being active on a global scale means for the Wacker Neuson Group, to show responsibility on a global scale. Therefore, we are engaged in. It is our mission to bring transparency to the world of automation with our measurement system solutions. By means of an iba system, the user can understand..
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